Question 1: Isn't the pass depth for the ThruProfile a little too much? 5.625 mm for a 2 mm dia. bit. Ditto for the StandoffPocket. Unless the material is foam.
Question 2:Does the 2mm end mill get fatter above the cutting portion? If it does I would check for interference with the standoffs and lip while cutting the ThruProfile and StandoffPocket. Easily fixed by making the standoffs round and making the lip (and material) a bit larger.
Question 3: Why the LipProfile toolpath? That edge is also cut by the StandoffPocket toolpath.
Question 4: What does the STL in the title refer to? I don't see any .STL files here. Nor would I expect to for this type of project.
Note: Spaces are permitted in toolpath and Layer names, if you so desire.
I suspect my questions are just covering things that ordinarily would be fixed before cutting.
Good judgement comes from experience.
Experience comes from bad judgement.